A molecular T-pentomino for separating BTEX hydrocarbons.

Methods to separate molecules (e.g., petrochemicals) are exceedingly important industrially. A common approach for separations is to crystallize a host molecule that either provides an enforced covalent cavity (intrinsic cavity) or packs inefficiently (extrinsic cavity). Here we report a self-assembled molecule with a shape highly biased to completely enclose space and, thereby, pack efficiently yet hosts and allows for the separation of BTEX hydrocarbons (i.e., benzene, toluene, ethylbenzene, xylenes). The host is held together by N → B bonds and forms a diboron assembly with a shape that conforms to a T-shaped pentomino. A T-pentomino is a polyomino, which is a plane figure that tiles a plane without cavities and holes, and we show the molecule to crystallize into one of six polymorphic structures for T-pentomino tiling. The separations occur at mild conditions while rejecting similarly shaped aromatics such as xylene isomers, thiophene, and styrene. Our observation on the structure and tiling of the molecular T-pentomino allows us to develop a theory on how novel synthetic molecules that mimic the structures and packing of polyominoes can be synthesized and-quite counterintuitively-developed into a system of hosts with cavities used for selective and useful separations.

DDX3X and Stress Granules: Emerging Players in Cancer and Drug Resistance.

The DEAD (Asp-Glu-Ala-Asp)-box helicase 3 X-linked (DDX3X) protein participates in many aspects of mRNA metabolism and stress granule (SG) formation. DDX3X has also been associated with signal transduction and cell cycle regulation that are important in maintaining cellular homeostasis. Malfunctions of DDX3X have been implicated in multiple cancers, including brain cancer, leukemia, prostate cancer, and head and neck cancer. Recently, literature has reported SG-associated cancer drug resistance, which correlates with a negative disease prognosis. Based on the connections between DDX3X, SG formation, and cancer pathology, targeting DDX3X may be a promising direction for cancer therapeutics development. In this review, we describe the biological functions of DDX3X in terms of mRNA metabolism, signal transduction, and cell cycle regulation. Furthermore, we summarize the contributions of DDX3X in SG formation and cellular stress adaptation. Finally, we discuss the relationships of DDX3X, SG, and cancer drug resistance, and discuss the current research progress of several DDX3X inhibitors for cancer treatment.

Atomistic-Level Effects of Noncovalent Interactions and Crystalline Packing for Organic Material Structural Integrity upon Exposure to Gamma Radiation.

Developing an atomistic understanding of ionizing radiation induced changes to organic materials is necessary for intentional design of greener and more sustainable materials for radiation shielding and detection. Cocrystals are promising for these purposes, but a detailed understanding of how the specific intermolecular interactions within the lattice upon exposure to radiation affect the structural stability of the organic crystalline material is unknown. This study evaluates atomistic-level effects of γ radiation on both single- and multicomponent organic crystalline materials and how specific noncovalent interactions and packing within the crystalline lattice enhance structural stability. Dose studies were performed on all crystalline systems and evaluated via experimental and computational methods. Changes in crystallinity were evaluated by p-XRD and free radical formation was analyzed via EPR spectroscopy. Type of intermolecular interactions and packing within the crystal lattice was delineated and related to the specific free radical species formed and the structural integrity of each material. Periodic DFT and HOMO-LUMO surface mapping calculations provided atomistic-level identifications of the most probable sites for the radicals formed upon exposure to γ radiation and relate intermolecular interactions and molecular packing within the crystalline lattice to experimental results.

Mechanochemical Mediated Coexistence of B←N Coordination and Hydrogen Bonding.

Mechanochemistry afforded a photoactive cocrystal via coexisting (B)O-H⋅⋅⋅N hydrogen bonds and B←N coordination. Specifically, solvent-free mechanochemical ball mill grinding and liquid-assisted grinding of a boronic acid and an alkene resulted in mixtures of hydrogen-bonded and coordinated complexes akin to mixtures of noncovalent complexes that can be obtained in solution in equilibria processes. The alkenes of the hydrogen-bonded assembly undergo an intermolecular [2+2] photodimerization in quantitative conversion, effectively reporting the outcome of the self-assembly processes. Our results suggest that interplay involving noncovalent bonds subjected to mechanochemical conditions can lead to functional solids where, in the current case, the structure composed of the weaker hydrogen bonding interactions predominates.

Effects of Gamma Radiation on Single- and Multicomponent Organic Crystalline Materials.

Exploration of highly ionizing radiation damage to organic materials has mainly been limited to polymers and single-component organic crystals due to their use in coatings and scintillation detection. Additional efforts are needed to create new tunable organic systems with stability in highly ionizing radiation to rationally design novel materials with controllable chemical and physical properties. Cocrystals are a promising class of compounds in this area because of the ability to rationally design bonding and molecular interactions that could lead to novel material properties. However, currently it is unclear if cocrystals exposed to radiation will maintain crystallinity, stability, and physical properties. Herein, we report the effects of γ radiation on both single-component- and multicrystalline organic materials. After irradiation with 11 kGy dose both single- (trans-stilbene, trans-1,2-bis(4-pyridyl)ethylene (4,4'-bpe), 1,n-diiodotetrafluorobenzene (1,n-C6I2F4 ), 1,n-dibromotetrafluorobenzene (1,n-C6Br2F4 ), 1,n-dihydroxybenzene (1,n-C6H6O2 ) (where n = 1, 2, or 3)), and multicomponent materials (4,4'-bpe)·(1,n-C6I2F4 ), (4,4'-bpe)·(1,n-C6Br2F4 ), and (4,4'-bpe)·(1,n-C6H6O2 ) were analyzed and compared to their preirradiated forms. Radiation damage was evaluated via single-crystal- and powder-X-ray diffraction, Raman spectroscopy, differential scanning calorimetry, and solid-state fluorimetry. Single-crystal X-ray diffraction analysis indicated minimal changes in the lattice postirradiation, but additional crystallinity changes for bulk materials were observed via powder X-ray diffraction. Overall, cocrystalline forms with 4,4'-bpe were more stable than the related single-component systems and were related to the relative stability of the individual conformers to γ radiation. Fluorescence signals were maintained for trans-stilbene and 4,4'-bpe, but quenching of the signal was observed for the cocrystalline forms to varying degrees. Three of the single components, 1,2-diiodotetrafluorobenzene (1,2-C6I2F4 ), 1,4-diiodotetrafluorobenzene (1,4-C6I2F4 ), and 1,4-dibromotetrafluorobenzene (1,4-C6Br2F4 ), also underwent sublimation within an hour of exposure to air postirradiation. Further analysis using differential scanning calorimetry (DSC) and Raman spectroscopy attributed this phenomenon to removal of impurities adsorbed to the crystal surface during irradiation.

Inhibiting Sublimation of Thymol by Cocrystallization.

A thymol:4,4'-dipyridyl (2:1) cocrystal (Form I) is reported to suppress thymol sublimation. The cocrystal was prepared via solution-mediated phase transformation and its structure is sustained by O-H (phenol) ··· N (pyridyl) hydrogen bonds between two individual components. A cocrystal polymorph (Form II) was formed via solid state transformation or via vapor phase upon heating. Using gravimetry analysis, it was demonstrated that cocrystal Form I decreased the sublimation rate of thymol by 38-fold. This study demonstrates that cocrystallization is an effective approach to reduce vapor pressure and sublimation of solids, thus achieving odor-masking.

Mechanochemistry Facilitates a Single-Crystal X-ray Structure Determination of Free Base Naloxone Anhydrate.

A method to obtain single crystals of the opioid antagonist naloxone in the free base form is facilitated using mechanochemistry. The application of mechanochemistry reduces the number of steps and makes single crystals readily available from solution compared to using an approach based exclusively on solution or the reported method based on sublimation. The X-ray structure confirms the structure determined using powder diffraction and provides details of hydrogen bonding.

Programming Rapid Functional Group Diversification into a Solid-State Reaction: Aryl Nitriles for Self-Assembly, Click Reactivity, and Discovery of Coexisting Supramolecular Synthons.

A method to rapidly diversify the molecules formed in organic crystals is introduced, with aryl nitriles playing a novel dual role as both hydrogen-bond acceptors and modifiable organic groups. The discovery of coexisting supramolecular synthons in the same crystal is also described. The general concept is demonstrated by using a bis(aryl nitrile) alkene that undergoes a hydrogen-bond-directed intermolecular [2+2] photodimerization to form a tetra(aryl nitrile)cyclobutane. The product is readily converted by click reactivity to a tetra(aryl tetrazole) and by hydrolysis to a tetra(aryl carboxylic acid). The integration of aryl nitriles into solid-state reactions opens broad avenues to post-modify products formed in crystalline solids for rapid diversification.

Structures and Reactivities of Cocrystals Involving Diboronic Acids and Bipyridines: In Situ Linker Reaction and 1D-to-2D Dimensionality Change via Crystal-to-Crystal Photodimerization.

Cocrystallizations of diboronic acids [1,3-benzenediboronic acid (1,3-bdba), 1,4-benzenediboronic acid (1,4-bdba) and 4,4'-biphenyldiboronic acid (4,4'-bphdba)] and bipyridines [1,2-bis(4-pyridyl)ethylene (bpe) and 1,2-bis(4-pyridyl)ethane (bpeta)] generated the hydrogen-bonded 1 : 2 cocrystals [(1,4-bdba)(bpe)2 ] (1), [(1,4-bdba)(bpeta)2 ] (2), [(1,3-bdba)(bpe)2 (H2 O)2 ] (3) and [(1,3-bdba)(bpeta)2 (H2 O)] (4), wherein 1,3-bdba involved hydrated assemblies. The linear extended 4,4'-bphdba exhibited the formation of 1 : 1 cocrystals [(4,4'-bphdba)(bpe)] (5) and [(4,4'-bphdba-me)(bpeta)] (6). For 6, a hemiester was generated by an in-situ linker transformation. Single-crystal X-ray diffraction revealed all structures to be sustained by B(O)-H⋅⋅⋅N, B(O)-H⋅⋅⋅O, Ow -H⋅⋅⋅O, Ow -H⋅⋅⋅N, C-H⋅⋅⋅O, C-H⋅⋅⋅N, π⋅⋅⋅π, and C-H⋅⋅⋅π interactions. The cocrystals comprise 1D, 2D, and 3D hydrogen-bonded frameworks with components that display reactivities upon cocrystal formation and within the solids. In 1 and 3, the C=C bonds of the bpe molecules undergo a [2+2] photodimerization. UV radiation of each compound resulted in quantitative conversion of bpe into cyclobutane tpcb. The reactivity involving 1 occurred via 1D-to-2D single-crystal-to-single-crystal (SCSC) transformation. Our work supports the feasibility of the diboronic acids as formidable structural and reactivity building blocks for cocrystal construction.

Halogen-Bond Mediated [2+2] Photodimerizations: À la Carte Access to Unsymmetrical Cyclobutanes in the Solid State.

The ditopic halogen-bond (X-bond) donors 1,2-, 1,3-, and 1,4-diiodotetrafluorobenzene (1,2-, 1,3-, and 1,4-di-I-tFb, respectively) form binary cocrystals with the unsymmetrical ditopic X-bond acceptor trans-1-(2-pyridyl)-2-(4-pyridyl)ethylene (2,4-bpe). The components of each cocrystal (1,2-di-I-tFb)·(2,4-bpe), (1,3-di-I-tFb)·(2,4-bpe), and (1,4-di-I-tFb)·(2,4-bpe) assemble via N···I X-bonds. For (1,2-di-I-tFb)·(2,4-bpe) and (1,3-di-I-tFb)·(2,4-bpe), the X-bond donor supports the C=C bonds of 2,4-bpe to undergo a topochemical [2+2] photodimerization in the solid state: UV-irradiation of each solid resulted in stereospecific, regiospecific, and quantitative photodimerization of 2,4-bpe to the corresponding head-to-tail (ht) or head-to-head (hh) cyclobutane photoproduct, respectively.

Self-Assembly of Diboronic Esters with U-Shaped Bipyridines: "Plug-in-Socket" Assemblies.

Self-assembled complexes utilizing the ditopic dative bond acceptor 1,3-diboronic acid with catechol and complementary U-shaped donors in the form of 1,8-dipyridylnaphthalenes (1,8-bis(4-pyridyl)naphthalene (DPN), 1,8-bis(4-ethylenylpyridyl)naphthalene (DEPN), and 1,8-bis(4-ethynylpyridyl)naphthalene (DAPN)) yielded discrete two-component structures. The assemblies exhibit "plug-in-socket" geometries. DFT calculations are consistent with the donor pyridyl and acceptor catecholate being electron poor and rich, respectively. The assemblies pack via π-π interactions and support the inclusion of a solvent (i.e., DPN, DAPN). The materials may form a basis for the design of complex B-based structures (e.g., supramolecular dyads).

Cubane-forming cyclic dienes that exhibit orthogonal reactivities in the solid state.

Photoirradiation of a binary cocrystal composed of two different cyclic dienes generates a highly-symmetric cubane-like tetraacid cage regioselectively and in quantitative yield. The cage forms by a double [2+2] photodimerization of one of the diene cocrystal components. The second diene while photostable in the cocrystal reacts in a double [2+2] photodimerization as a pure form quantitatively to form a tetramethyl cubane-like cage. The stereochemistry of the cage is structurally authenticated.

Clues from cocrystals: a ternary solid, polymorphism, and rare supramolecular isomerism involving resveratrol and 5-fluorouracil.

We describe a supramolecular synthesis of a ternary cocrystal involving resveratrol and 5-fluorouracil (5-fu) with trans-bis(4-pyridyl)ethylene (bpe). We also have discovered a polymorph of a binary cocrystal involving 5-fu and bpe that originates from rare supramolecular isomerism.

Correction: Mechanical rigidity of a shape-memory metal-organic framework increases by crystal downsizing.

Correction for 'Mechanical rigidity of a shape-memory metal-organic framework increases by crystal downsizing' by Al A. Tiba et al., Chem. Commun., 2021, 57, 89-92, DOI: 10.1039/D0CC05684G.

Supramolecular construction of a cyclobutane ring system with four different substituents in the solid state.

Methods to form cyclobutane rings by an intermolecular [2 + 2] cross-photoreaction (CPR) with four different substituents are rare. These reactions are typically performed in the liquid phase, involve multiple steps, and generate product mixtures. Here, we report a CPR that generates a cyclobutane ring with four different aryl substituents. The CPR occurs quantitatively, without side products, and without a need for product purification. Generally, we demonstrate how face-to-face stacking interactions of aromatic rings can be exploited in the process of cocrystallization and the field of crystal engineering to stack and align unsymmetrical alkenes in CPRs to afford chiral cyclobutanes with up to four different aryl groups via binary cocrystals. Overall, we expect the process herein to be useful to generate chiral carbon scaffolds, which is important given the presence of four-membered carbocyclic rings as structural units in biological compounds and materials science.

Mechanical rigidity of a shape-memory metal-organic framework increases by crystal downsizing.

Soft porous nanocrystals with a pronounced shape-memory effect exhibit two- to three-fold increase in elastic modulus compared to the microcrystalline counterpart as determined by atomic force microscopy nanoindentation. The increase in rigidity is consistent with the known shape-memory effect displayed by the framework solid at the nanoscale. Crystal downsizing can offer new avenues for tailoring the mechanical properties of metal-organic frameworks.

Phototriggered Guest Release from a Nonporous Organic Crystal: Remarkable Single-Crystal-to-Single-Crystal Transformation of a Binary Cocrystal Solvate to a Ternary Cocrystal.

The development of organic solids for applications in materials science requires a fundamental understanding of how close packing of molecules can affect structure and function. We report here nonporous organic crystals that release entrapped guest molecules upon application of UV light. We show components of binary cocrystal solvates to undergo an intermolecular photoreaction to generate ternary cocrystals that results in release of entrapped solvent molecules. The phototriggered guest release occurs in a single-crystal-to-single-crystal transformation that is in the absence pores and channels in the solid. The cocrystals are composed of a tetratopic hydrogen-bond-acceptor molecule synthesized in the solid state. The UV-light results in [2 + 2] photodimerization of an isocoumarin to generate a ternary cocrystal with cyclobutane molecules that support guest release.

Superstructural diversity in salt-cocrystals: higher-order hydrogen-bonded assemblies formed using U-shaped dications and with assistance of π--π stacking.

Salt cocrystals with components that assemble by hydrogen bonds and aromatic anion-molecule stacks (π--π stacks) are reported. U-shaped bipyridines and an isocoumarin carboxylic acid self-assemble to form 5-, 6-, and 10-component aggregates with components in double and quadruple face-to-face stacks. DFT calculations support the π--π stacks to help stabilize the salt cocrystals.

Cambiarenes: Single-Step Synthesis and Selective Zwitterion Binding of a Clip-Shaped Macrocycle with a Redox-Active Core.

A novel macrocyclic host molecule was synthesized that forms in a single step from commercially available starting materials. The core of the macrocycle backbone possesses two quinone rings and, thus, it is redox-active. Host-guest binding involving the clip-shaped cavity indicates selective binding of pyridine N-oxides based on the electron density of and steric bulk around the anionic oxygen.

Halogen versus Hydrogen Bonding in Binary Cocrystals: Novel Conformation a Coformer with [2+2] Photoreactivity of Criss-Crossed C=C Bonds.

A series of cocrystals involving the hydrogen- and halogen-bond donor coformers catechol (cat) and 1,2-diiodotetrafluorobenzene (1,2-di-I-tFb), respectively, is reported. Each coformer forms a cocrystal with each of the three symmetric bipyridines trans-1,2-bis(n-pyridyl)ethylene (n,n'-bpe, where: n=n'=2, 3, 4). Four novel cocrystals (cat) ⋅ (3,3'-bpe), 2(1,2-di-I-tFb) ⋅ (2,2'-bpe), 2(1,2-di-I-tFb) ⋅ (3,3'-bpe), and (1,2-di-I-tFb) ⋅ (4,4'-bpe) comprise components that assemble by either O-H⋅⋅⋅N hydrogen bonds (cat) or N⋅⋅⋅I halogen bonds (1,2-di-I-tFb). In (cat) ⋅ (3,3'-bpe), cat acts as a template to support an intermolecular [2+2] photocycloaddition of 3,3'-bpe. The reactivity occurs via a one-dimensional (1D) hydrogen-bonded tape with stacked and criss-crossed olefins that react stereoselectively and quantitatively to form rctt-tetrakis(3-pyridyl)cyclobutane (3,3'-tpcb). The reactivity of the criss-crossed olefins is facilitated by a hitherto not reported cis-gauche conformation adopted by cat. The stereochemistry of 3,3'-tpcb is confirmed in the cocrystal 2(cat) ⋅ (3,3'-tpcb).